Mouse Brain Coronal Section
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It is created from a 3d volumetric reference atlas annotated symmetrically using image data averaged from 1 675 adult mouse brain specimens.
Mouse brain coronal section. Access online via elsevier 2001. The mouse brain in stereotaxic coordinates. It provides spatial context and a common coordinate framework for mapping data in the allen mouse connectivity atlas the allen cell types database mouse and the allen brain observatory.
132 coronal sections evenly spaced at 100 µm intervals and annotated to detail numerous brain structures. Paxinos george and keith b j. Hello brain mapping community i am looking to register ihc expression data from coronal sections to a p14 3d reference atlas.
We generated a whole brain molecular atlas by capturing the spatial patterns of gene expression in the adult mouse brain using st 18. The 2d coronal reference atlas is created from a 3d volumetric reference atlas annotated symmetrically using an average of data merged from 1 675 brain specimens. Rat brain atlas cpu caudate putamen striatum coronal.
I would like to use stereotaxic coordinates so i can also register my images to the mouse brain connectivity atlas expression data. Ml mm ap mm dv mm submit.
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